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The original problem with arguments is fixed by the recent 
changes to the two .bat scripts.

The second problem where jythonc looks for the .class files 
in --workdir even the the -d options was specified to javac 
is a lot harder to solve. Keep in mind that not all java 
compilers use -d to specify the output directory.

I'm going to close the bugreport as "fixed" despite the 
missing solution to problem #2.